Introduction | Sequence Cleaning | Translation | GC Content | Reading and Writing Files
Package: baseq 0.2.0
baseq: Basic Sequence Processing Tool for Biological Data
Primarily created as an easy and understanding way to do basic sequences surrounding the central dogma of molecular biology.
Authors:
baseq_0.2.0.tar.gz
baseq_0.2.0.zip(r-4.7-any)baseq_0.2.0.zip(r-4.6-any)baseq_0.2.0.zip(r-4.5-any)
baseq_0.2.0.tgz(r-4.6-any)baseq_0.2.0.tgz(r-4.5-any)
baseq_0.2.0.tar.gz(r-4.7-any)baseq_0.2.0.tar.gz(r-4.6-any)
baseq_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
baseq/json (API)
| # Install 'baseq' in R: |
| install.packages('baseq', repos = c('https://ambuvjyn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ambuvjyn/baseq/issues
Datasets:
- sars_fragment - SARS-CoV-2 Genome Fragment
Last updated from:fc12ff769a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 121 | ||
| source / vignettes | OK | 161 | ||
| linux-release | OK | 111 | ||
| macos-release | OK | 112 | ||
| macos-oldrel | OK | 239 | ||
| windows-devel | OK | 75 | ||
| windows-release | OK | 75 | ||
| windows-oldrel | OK | 68 | ||
| wasm-release | OK | 89 |
Exports:as_baseq_dnaas_baseq_rnaas_Biostringscalculate_assembly_statscalculate_chargecalculate_codon_usagecalculate_identitycalculate_mwcalculate_picalculate_tmclean_fileclean_seqcount_basescount_kmerscount_patterndna_to_proteindna_to_rnafastq_to_fastafilter_fastq_qualityfind_cpg_islandsfind_longest_orfgc_contentget_genetic_codeplot_aa_compositionplot_dotplotplot_gc_skewplot_hydrophobicityread_seqrev_compreverse_translaterna_to_dnarna_to_proteinsearch_motifshuffle_sequencesimulate_digestionsimulate_fastasimulate_fastqsimulate_pcrsimulate_sequencesummarize_fastatranslatewrite_seq
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
